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Flexible Solutions for NGS Data Analysis

Partek Flow software is designed specifically for the analysis needs of next generation sequencing applications including single cell, RNA, small RNA, and DNA sequencing. With an easy-to-use graphical interface and the ability to build your own custom analysis pipelines or download pipelines built by our scientists, you can perform:

  • Alignment
  • Quantification
  • Quality control


  • Statistics
  • Visualization


Find the Biology in Your Data

Using simple point-and-click actions, Partek Flow software makes it easy to find the biological meaning within your data.

  • Measure gene expression levels
  • Discover coding SNPs
  • Identify differential expression at the gene and transcript level
  • Detect gene fusions and novel isoforms

Want more?
Watch the analysis of an RNA-Seq study in Partek Flow

Partek Flow on a Tablet Device
Intuitive for Biologists

Partek Flow was built to enable researchers to self-sufficiently perform data analysis. Here are a few of the features that you will appreciate:

  • Graphical, Data Smart Interface™  for a point-and-click environment that presents only relevant options
  • Pre-installed and downloadable analysis pipelines including AmpliSeq, Whole Transcriptome, and Small RNA-Seq
  • Interactive visualizations make getting to the biology in your data easy
  • First-class technical support is never more than a click or phone call away
  • Accessible from any internet device including tablet, smart phone, or computer
  • Collaborate with colleagues anywhere on the same project without transferring data
  • Seamless integration with all your Partek software for a start-to-finish solution


Powerful for Bioinformaticists

Partek Flow has the tools and statistics that appeal to bioinformaticists and system administrators:

  • Powerful statistics integrated throughout for biologically accurate results
  • Custom pipeline creation so that you can create your own pipelines and share with others
  • Management of user permissions for users anywhere to increase security and collaboration and eliminate costly data transfer
  • Controlled vocabulary to standardize terminology and improve consistency across studies
  • Centralized installation including desktop, server, cluster, or cloud with access from any browser


Powerful for Bioinformaticists

Try out our software for yourself with a free two-week trial.

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System Requirements