Mayday SeaSight: Combined Analysis of Deep Sequencing and Microarray Data

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Battke F, Nieselt K. Mayday SeaSight: Combined Analysis of Deep Sequencing and Microarray Data. PLoS One. 2011 Jan 31;6(1):e16345.

Plasma epidermal growth factor levels predict cognitive decline in Parkinson disease

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Chen-Plotkin AS, Hu WT, Siderowf A, Weintraub D, Goldmann Gross R, Hurtig HI, Xie SX, Arnold SE, Grossman M, Clark CM, Shaw LM, McCluskey L, Elman L, Van Deerlin VM, Lee VM, Soares H, Trojanowski JQ. Plasma epidermal growth factor levels predict cognitive decline in Parkinson disease. Ann Neurol. 2011 Apr;69(4):655-63. doi: 10.1002/ana.22271.

Development of gut microbiota in infants not exposed to medical interventions

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Eggesbø M, Moen B, Peddada S, Baird D, Rugtveit J, Midtvedt T, Bushel PR, Sekelja M, Rudi K. Development of gut microbiota in infants not exposed to medical interventions. APMIS. 2011 Jan;119(1):17-35. doi: 10.1111/j.1600-0463.2010.02688.x.

BiologicalNetworks 2.0- an integrative view of genome biology data

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Kozhenkov S, Dubinina Y, Sedova M, Gupta A, Ponomarenko J, Baitaluk M. BiologicalNetworks 2.0- an integrative view of genome biology data. BMC Bioinformatics. 2010 Dec 29;11:610.

Introduction to the Development and Validation of Predictive Biomarker Models from High-Throughput Data Sets

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Deng, X., & Campagne, F. Introduction to the Development and Validation of Predictive Biomarker Models from High-Throughput Data Sets. Statistical Methods in Molecular Biology, 2010; 620(4):425-470. doi:10.1007/978-1-60761-580-4_15.

Genetic tools and algorithms for gene discovery in major congenital anomalies

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Donahoe, P.K., Noonan, K.M., Lage, K. Genetic tools and algorithms for gene discovery in major congenital anomalies. Birth Defects Research Part A: Clinical and Molecular Teratology, 2009; 85(1):6-12. doi:10.1002/bdra.20546.

Application of toxicogenomic tools in the drug research and development process

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Fabre, N., Anglade, I., & Vericat, J.A. Application of toxicogenomic tools in the drug research and development process. Toxicology Letters, 2009; 186(1):13-17. doi:10.1016/j.toxlet.2009.01.012.

Comparison of Comparative Genomic Hybridization Technologies Across Microarray Platforms

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Hester, S.D., Reid, L., Nowak, N.., Jones, W.D., Parker, J.S., Knudtson, K., Ward, W., Tiesman, J., & Denslow, N.D. Comparison of Comparative Genomic Hybridization Technologies Across Microarray Platforms. J Biomol Tech. 2009; 20(2): 135–151.

Analysis of Alternative Splicing with Microarrays

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Hui, J., Kishore, S., Khanna, A., & Stamm, S. Analysis of Alternative Splicing with Microarrays. Bioinformatics for Systems Biology, Part III, 2009; 267-279. doi:10.1007/978-1-59745-440-7_14.

Comparative Genomic Hybridization on Spotted Oligonucleotide Microarrays

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Kim, Y.H., & Pollack, J.R. Comparative Genomic Hybridization on Spotted Oligonucleotide Microarrays. Methods in Molecular Biology, Microarray Analysis of the Physical Genome, 2009. 556:21-32. doi:10.1007/978-1-60327-192-9_3.