Genetic tools and algorithms for gene discovery in major congenital anomalies

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Donahoe, P.K., Noonan, K.M., Lage, K. Genetic tools and algorithms for gene discovery in major congenital anomalies. Birth Defects Research Part A: Clinical and Molecular Teratology, 2009; 85(1):6-12. doi:10.1002/bdra.20546.

Application of toxicogenomic tools in the drug research and development process

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Fabre, N., Anglade, I., & Vericat, J.A. Application of toxicogenomic tools in the drug research and development process. Toxicology Letters, 2009; 186(1):13-17. doi:10.1016/j.toxlet.2009.01.012.

Comparison of Comparative Genomic Hybridization Technologies Across Microarray Platforms

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Hester, S.D., Reid, L., Nowak, N.., Jones, W.D., Parker, J.S., Knudtson, K., Ward, W., Tiesman, J., & Denslow, N.D. Comparison of Comparative Genomic Hybridization Technologies Across Microarray Platforms. J Biomol Tech. 2009; 20(2): 135–151.

Analysis of Alternative Splicing with Microarrays

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Hui, J., Kishore, S., Khanna, A., & Stamm, S. Analysis of Alternative Splicing with Microarrays. Bioinformatics for Systems Biology, Part III, 2009; 267-279. doi:10.1007/978-1-59745-440-7_14.

Comparative Genomic Hybridization on Spotted Oligonucleotide Microarrays

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Kim, Y.H., & Pollack, J.R. Comparative Genomic Hybridization on Spotted Oligonucleotide Microarrays. Methods in Molecular Biology, Microarray Analysis of the Physical Genome, 2009. 556:21-32. doi:10.1007/978-1-60327-192-9_3.

Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway

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Yi, M., Mudunari, U., Che, A., & Stephens, R.M. Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis. BMC Bioinformatics. 2009; 10: 200. doi: 10.1186/1471-2105-10-200.

Construction of a reference gene association network from multiple profiling data: application to data analysis

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Ucar, D., Neuhaus, I., Ross-MacDonald, P., Tilford, C., Parthasarathy, S., Siemers, N., & Ji, R-R. Construction of a reference gene association network from multiple profiling data: application to data analysis. Bioinformatics 2007 23(20):2716-2724. doi:10.1093/bioinformatics/btm423.

Reducing noise due to technical batch effects in biological data

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Lyon, S., Bennett, D., Spitnagel, E., Lin, J., Downey, T. Reducing noise due to technical batch effects in biological data. Poster and presentation at LabAutomation 2006. January 2006, Palm Springs, CA.

Introduction to bioinformatics

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Kondu, P. 2005. Introduction to bioinformatics. Presented at the HESI Protein Allegenicity Technical Committee Bioinformatics Expert Panel Workshop. February 2005, Mallorca, Spain.

An intelligent tool for image analysis and pattern recognition

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Nair, H. An intelligent tool for image analysis and pattern recognition. International Journal of Signal Processing, 2004, 1(4).