ChIPing the cistrome of PXR in mouse liver

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Cui J.Y., Gunewardena S.S., Rockwell C.E. & Klaassen C.D. ChIPing the cistrome of PXR in mouse liver. Nucleic Acids Research, 2010, doi:10.1093/nar/gkq654.

ChIP-on-Chip Analysis Methods for Affymetrix Tiling Arrays

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Yoder, S., & Enkemann, S.A. ChIP-on-Chip Analysis Methods for Affymetrix Tiling Arrays. Chromatin Protocals, Methods in Molecular Biology, 2009; 523:367-381. doi:10.1007/978-1-59745-190-1.

Breast Cancer–Associated Fibroblasts Confer AKT1-Mediated Epigenetic Silencing of Cystatin M in Epithelial Cells

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Lin, H-J.L., Zuo, T., Lin, C-H, Kuo, C.T., Liyanarachchi, S., Sun, S., Shen, R., Deatherage, D.E., Potter, D., Asamoto, L., Lin, S., Yan, P.S., Cheng, A-L., Ostrowski, M.C., & Huang, T.H-M. Breast Cancer–Associated Fibroblasts Confer AKT1-Mediated Epigenetic Silencing of Cystatin M in Epithelial Cells. Cancer Res. 2008; 68(24):10257-10266.

Epigenetic mapping & functional analysis in breast cancer metastasis model using whole-genome promoter tiling microarrays

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Rodenhiser, D.I., Andrews, J., Kennette, W., Sadikovic, B., Mendlowitz, A., Tuck, A.B., & Chambers, A.F. Epigenetic mapping & functional analysis in breast cancer metastasis model using whole-genome promoter tiling microarrays. Breast Cancer Research, 2008, 10:R62. doi:10.1186/bcr2121.

Transcriptional Networks Inferred from Molecular Signatures of Breast Cancer

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Tongbai, R., Idelman, G., Nordgard, S.H., Cui, W., Jacobs, J., Haggerty, C.M., Chanock, S.J., Børresen-Dale, A-L., Livingston, G., Shaunessy, P, Chiang, C-H., Kristensen, V.N., Bilke, S., & Gardner, K. Transcriptional Networks Inferred from Molecular Signatures of Breast Cancer. American Journal of Pathology, 2008, 172:495-509. doi:10.2353/ajpath.2008.061079.