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Next Generation Sequencing

Title Body Taxonomy Tags Year
MARF and Opa1 Control Mitochondrial and Cardiac Function in Drosophila

Dorn GW 2nd, Clark CF, Eschenbacher WH, Kang MY, Engelhard JT, Warner SJ, Matkovich SJ, Jowdy CC.

MARF and Opa1 Control Mitochondrial and Cardiac Function in Drosophila.


Circ Res. 2011 Jan 7;108(1):12-7.


Next Generation Sequencing 2011
RISC RNA sequencing for context-specific identification of in vivo microRNA targets

Matkovich SJ, Van Booven DJ, Eschenbacher WH, Dorn GW 2nd. RISC RNA sequencing for context-specific identification of in vivo microRNA targets. Circ Res. 2011 Jan 7;108(1):18-26.


Next Generation Sequencing NGS, RNA-seq, Microarray, microRNA 2011
Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators: application to Galphaq

Matkovich SJ, Zhang Y, Van Booven DJ, Dorn GW 2nd.

Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators: application to Galphaq.

Circ Res. 2010 May 14;106(9):1459-67.


Next Generation Sequencing 2010
Genome-wide distribution of macroH2A1 histone variants in mouse liver chromatin

Changolkar LN, Singh G, Cui K, Berletch JB, Zhao K, Disteche CM, Pehrson JR.

Genome-wide distribution of macroH2A1 histone variants in mouse liver chromatin.

Mol Cell Biol. 2010 Dec;30(23):5473-83


Next Generation Sequencing 2010
Genome-wide analysis of DNA methylation and gene expression changes in the mouse lung following subchronic arsenate exposure

Boellmann F, Zhang L, Clewell HJ, Schroth GP, Kenyon EM, Andersen ME, Thomas RS.

Alterations in DNA methylation have been proposed as a mechanism for the complex toxicological effects of arsenic. In this study, whole-genome DNA methylation and gene expression changes were evaluated in lungs from female mice exposed for 90 days to 50 ppm arsenate (As) in drinking water.

Toxicol Sci. 2010 Oct;117(2):404-17. Epub 2010 Jul 28.

Next Generation Sequencing 2010
Deletion of TDP-43 down-regulates Tbc1d1, a gene linked to obesity, and alters body fat metabolism

Chiang, P-M., Ling, J., Jeong, Y.H., Price, D.L., Aja, S.M., & Wong, P.C. Deletion of TDP-43 down-regulates Tbc1d1, a gene linked to obesity, and alters body fat metabolism. PNAS, 2010. doi:10.1073/pnas.1002176107.


Next Generation Sequencing 2010
Deep mRNA Sequencing for In Vivo Functional Analysis of Cardiac Transcriptional Regulators. Application to G{alpha}q

Matkovich, S.J., Zhang, Y., Van Booven, D., & Dorn, G.W. II. Deep mRNA Sequencing for In Vivo Functional Analysis of Cardiac Transcriptional Regulators. Application to G{alpha}q. Circ. Res., 2010; 106:1459-1467. doi:10.1161/CIRCRESAHA.110.217513.


Next Generation Sequencing 2010
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