Partek Genomics Suite

Laptop showing Partek Genomics Suite PCA visualization

Partek Genomics Suite Logo

Partek® Genomics Suite® is a statistical analysis software that lets you analyze microarray, qPCR, and pre-processed NGS data right from your desktop computer. It is fast, agile, and memory efficient. With a user-friendly interface, rich visualizations, and guided workflows for common genomics assays, Partek Genomics Suite gives biologists, bioinformaticists, and statisticians a single, integrated solution for trustworthy results.

System Requirements

Partek Genomics Suite Enables Fast and Easy Genomic Data Analysis

Easy to use interface

Easy-to-use
interface

Workflows

Built-in step-by-step workflows
for popular genomic applications

Visualizations

Information rich and
publication ready visualizations

statistical algorithms

Publicly available statistical
algorithms with optimized settings

Peak annotation

Handles data from all major platforms

desktop monitor

Desktop installation on
Windows®, Linux®, or Macintosh®

Documentation

Robust and searchable
online documentation

Scientific Support

Access to local
scientific experts


Tools in Partek Genomics Suite

Guided Workflows

Gene Expression
RNA-Seq
miRNA Expression
miRNA-Seq
Loss of Heterozygosity
ChIP-Seq
Methylation - Illumina EPIC
Copy Number
Allele Specific Copy Number
And more…

Statistical Tools

Logistic Regression
Chi Square
False Discovery Rate
Fisher Exact
Batch Effect Removal
Power Analysis
Flexible normalization
Flexible scaling
Multiple Test Correction
Predictive Modeling

Integrated databases

RefSeq
Ensembl
dbSNP
GENCODE
miRBase
TargetScan
JASPAR
And more...

Data Exploration

Partial Least Squares
PCA
Partitioning Clustering
MDS
Hierarchical Clustering
SOM
Correspondence Analysis
Pattern Recognition

Biological Interpretation

GO Enrichment
Gene set ANOVA
Gene Set Enrichment Analysis
Integrates with Partek Pathway

Analytical Spreadsheet

Transform and transpose data
Unlimited rows/columns
Copy and paste values
Import any txt or csv
Flexible filter options
Merge spreadsheets

Genomic Data Analysis

Quantify BAM files
Genomic Smoothing
Microarray annotaion
Genomic data integration
GCRMA & RMA correction
Motif detection and discovery

Visualizations

Venn Diagram
Dot Plot
Genome viewer
Heat map
Box and Whiskers
Violin Plot
Karyogram viewer
Histograms
Chromosome viewer
Volcano Plot
2D & 3D Scatter Plot
And more...

Genomic Data Types

Text files
CEL files
IDAT files
BAM files
And more...
Kathi GoschePartek Genomics Suite